JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA5A_chr5_9030033_9551075	0/0	t0046	8528	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0047	8528	1	0	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0048	8529	1	0	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0049	8532	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0050	8528	1	0	0	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0051	8527	1	0	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0052	8531	1	0	0	0	1	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0053	8526	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0054	8531	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0055	8531	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0056	8534	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0057	8534	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0058	8528	1	0	0	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0059	8529	1	0	0	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0060	8529	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0061	8524	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0062	8531	1	0	0	0	0	1	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0063	8531	1	0	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0064	8526	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0065	8526	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0066	8528	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0067	8526	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0068	8528	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0069	8523	1	0	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0070	8531	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0071	8531	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0072	8528	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0073	8528	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0074	8529	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0075	8538	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0076	8539	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0077	8529	1	0	1	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0078	8529	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0079	8528	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0080	8534	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0081	8528	1	1	0	0	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5A_chr5_9030033_9551075	0/0	t0082	8532	1	0	0	1	0	0	copy fasta	SEMA5A	chr5	9030033	9551075
SEMA5B_chr3_122904082_123032763	1/1	t0001	1400	148	29	34	48	9	26	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0002	1400	56	8	12	28	2	6	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0003	1390	14	13	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0004	1400	12	1	2	2	2	5	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0005	1402	8	1	1	4	0	2	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0006	1402	6	6	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0007	1402	5	3	2	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0008	1400	5	5	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0009	1402	4	4	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0010	1400	4	0	4	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0011	1400	4	2	2	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0012	1400	3	0	0	3	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0013	1400	2	0	2	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763