JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA5B_chr3_122904082_123032763	0/0	t0014	1400	2	0	0	0	0	2	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0015	1400	2	0	1	0	1	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0016	1390	2	2	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0017	1390	2	2	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0018	1400	2	2	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0019	1400	1	0	0	1	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0020	1400	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0021	1400	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0022	1400	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0023	1402	1	0	0	0	0	1	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0024	1390	1	0	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0025	1400	1	0	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0026	1400	1	0	1	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA5B_chr3_122904082_123032763	0/0	t0027	1400	1	1	0	0	0	0	copy fasta	SEMA5B	chr3	122904082	123032763
SEMA6A_chr5_116438555_116579823	0/1	t0001	3730	94	11	23	42	6	11	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0002	3730	23	2	5	13	0	3	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0003	3735	10	4	4	0	0	2	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0004	3730	10	4	5	0	0	1	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0005	3732	10	7	1	0	0	2	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0006	3730	8	3	0	3	2	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0007	3736	7	0	0	7	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0008	3730	7	6	1	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0009	3727	6	0	2	4	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0010	3736	6	1	1	4	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0011	3727	6	0	2	2	2	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	1/0	t0012	3736	4	0	2	1	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0013	3730	4	0	0	4	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0014	3730	4	3	1	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0015	3732	4	0	0	4	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0016	3730	4	0	3	0	1	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0017	3732	3	2	0	0	0	1	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0018	3730	3	2	1	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0019	3730	3	0	1	0	0	2	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0020	3730	3	0	3	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0021	3735	3	0	2	0	0	1	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0022	3732	3	3	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0023	3730	3	3	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0024	3736	2	0	0	0	2	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0025	3730	2	0	0	2	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0026	3730	2	0	0	2	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0027	3719	2	2	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0028	3730	2	0	1	0	1	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0029	3730	2	0	0	2	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0030	3730	2	0	1	1	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0031	3736	2	2	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0032	3730	2	2	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0033	3736	2	2	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0034	3730	2	2	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0035	3719	2	2	0	0	0	0	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6A_chr5_116438555_116579823	0/0	t0036	3730	1	0	0	1	0	0	copy fasta	SEMA6A	chr5	116438555	116579823