JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA6A_chr5_116438555_116579823	0/0	t0087	3730	1	0	0	0	0	1	copy fasta	SEMA6A	chr5	116438555	116579823
SEMA6B_chr19_4537593_4564684	1/0	t0001	1196	265	40	56	128	11	29	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/1	t0002	1196	93	5	22	48	3	14	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0003	1196	27	24	2	0	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0004	1197	13	12	1	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0005	1197	6	6	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0006	1196	5	0	1	0	1	3	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0007	1197	5	2	0	3	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0008	1196	5	0	2	0	1	2	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0009	1196	2	0	2	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0010	1196	2	0	0	2	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0011	1196	2	2	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0012	1196	2	0	0	2	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0013	1197	2	1	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0014	1196	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0015	1196	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0016	1196	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0017	1196	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0018	1197	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0019	1196	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0020	1197	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0021	1197	1	0	0	1	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0022	1196	1	0	0	0	0	1	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0023	1196	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6B_chr19_4537593_4564684	0/0	t0024	1196	1	1	0	0	0	0	copy fasta	SEMA6B	chr19	4537593	4564684
SEMA6C_chr1_151126707_151151631	0/1	t0001	1081	197	24	40	98	6	28	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	1/0	t0002	1081	70	24	12	22	7	4	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0003	1081	40	29	8	1	1	1	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0004	1081	21	14	0	2	1	4	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0005	1081	3	0	0	0	1	2	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0006	1081	1	0	1	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0007	1081	1	0	1	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0008	1081	1	0	0	0	0	1	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0009	1081	1	1	0	0	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0010	1081	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0011	1081	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6C_chr1_151126707_151151631	0/0	t0012	1081	1	0	0	1	0	0	copy fasta	SEMA6C	chr1	151126707	151151631
SEMA6D_chr15_47712505_47779228	0/0	t0001	2688	58	4	15	26	5	8	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0002	2699	26	7	4	13	0	2	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0003	2695	24	6	9	1	3	5	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0004	2694	24	0	10	9	2	3	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0005	2695	20	0	1	18	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0006	2697	19	3	5	11	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0007	2698	14	0	2	11	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0008	2687	12	0	0	6	0	6	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0009	2696	11	1	3	7	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0010	2694	9	9	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0011	2696	8	0	2	6	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0012	2696	8	0	0	8	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	1/0	t0013	2686	8	4	0	2	0	1	copy fasta	SEMA6D	chr15	47712505	47779228