JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA6D_chr15_47712505_47779228	0/0	t0014	2698	7	1	0	4	1	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0015	2692	7	0	4	1	1	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0016	2690	7	0	0	7	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0017	2700	6	0	1	4	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0018	2694	6	6	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0019	2695	6	6	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0020	2689	5	4	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0021	2684	5	0	4	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0022	2703	4	2	1	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0023	2687	3	1	0	0	2	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0024	2701	3	3	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0025	2697	3	3	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0026	2698	3	1	1	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0027	2692	3	2	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0028	2689	3	0	0	3	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/1	t0029	2690	3	0	0	2	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0030	2691	3	3	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0031	2696	3	0	2	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0032	2696	2	2	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0033	2705	2	2	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0034	2699	2	0	0	2	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0035	2696	2	0	1	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0036	2700	2	0	0	2	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0037	2694	2	0	0	1	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0038	2690	2	2	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0039	2689	2	0	0	2	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0040	2685	2	0	0	2	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0041	2699	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0042	2701	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0043	2701	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0044	2697	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0045	2696	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0046	2698	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0047	2693	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0048	2696	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0049	2696	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0050	2692	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0051	2703	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0052	2703	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0053	2704	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0054	2706	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0055	2702	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0056	2703	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0057	2704	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0058	2697	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0059	2698	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0060	2699	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0061	2698	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0062	2698	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0063	2701	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228