Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAZ1B_chr7_73435406_73527293	0/0	t0012	1664	1	0	0	1	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0013	1664	1	1	0	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0014	1663	1	1	0	0	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ1B_chr7_73435406_73527293	0/0	t0015	1663	1	0	0	1	0	0	copy fasta	BAZ1B	chr7	73435406	73527293
BAZ2A_chr12_56590596_56635326	0/0	t0001	3240	69	7	19	33	2	8	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0002	3236	36	1	4	25	2	4	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0003	3238	19	3	4	11	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0004	3238	16	0	3	10	0	3	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0005	3242	11	2	1	6	0	2	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/1	t0006	3228	10	4	2	0	3	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0007	3234	8	0	6	0	1	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0008	3236	8	0	0	8	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0009	3244	8	2	1	4	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0010	3240	7	1	1	2	3	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0011	3240	6	1	1	3	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0012	3240	5	4	0	0	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0013	3228	5	4	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0014	3234	4	0	0	4	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0015	3238	4	0	0	3	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0016	3242	4	0	1	2	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0017	3232	3	0	0	3	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0018	3234	3	3	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0019	3240	3	0	0	3	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0020	3205	3	3	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0021	3246	3	2	0	0	1	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0022	3207	3	3	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0023	3209	3	3	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0024	3226	3	0	2	0	1	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0025	3238	2	0	0	1	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0026	3240	2	0	0	2	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0027	3238	2	1	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0028	3242	2	2	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0029	3244	2	2	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0030	3246	2	2	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0031	3252	2	2	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0032	3228	2	1	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0033	3254	2	2	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0034	3266	2	2	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0035	3226	2	0	2	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0036	3230	2	2	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0037	3248	2	2	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0038	3258	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0039	3240	1	0	0	0	1	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0040	3254	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0041	3240	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0042	3236	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0043	3236	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0044	3197	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	1/0	t0045	3227	1	0	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0046	3234	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326