JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEMA6D_chr15_47712505_47779228	0/0	t0064	2702	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0065	2695	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0066	2698	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0067	2699	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0068	2696	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0069	2694	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0070	2693	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0071	2693	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0072	2695	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0073	2694	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0074	2698	1	0	1	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0075	2692	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0076	2692	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0077	2693	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0078	2694	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0079	2695	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0080	2692	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0081	2689	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0082	2693	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0083	2694	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0084	2688	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0085	2690	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0086	2690	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0087	2687	1	0	0	0	0	1	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0088	2684	1	1	0	0	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA6D_chr15_47712505_47779228	0/0	t0089	2690	1	0	0	1	0	0	copy fasta	SEMA6D	chr15	47712505	47779228
SEMA7A_chr15_74404289_74438958	1/1	t0001	1376	319	61	71	138	15	32	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0002	1376	49	7	0	32	1	9	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0003	1376	11	11	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0004	1376	10	8	2	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0005	1376	4	0	0	4	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0006	1376	4	0	0	4	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0007	1376	2	0	0	0	0	2	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0008	1376	1	0	0	0	0	1	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0009	1376	1	0	0	1	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0010	1376	1	0	1	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0011	1376	1	0	0	1	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMA7A_chr15_74404289_74438958	0/0	t0012	1376	1	1	0	0	0	0	copy fasta	SEMA7A	chr15	74404289	74438958
SEMG1_chr20_45202033_45214768	1/1	t0001	234	374	77	73	174	12	36	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	t0002	234	28	9	9	6	2	2	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	t0003	234	3	0	0	3	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	t0004	234	2	2	0	0	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG1_chr20_45202033_45214768	0/0	t0005	234	1	0	0	1	0	0	copy fasta	SEMG1	chr20	45202033	45214768
SEMG2_chr20_45216373_45229458	1/1	t0001	230	362	96	76	138	14	36	copy fasta	SEMG2	chr20	45216373	45229458
SENP1_chr12_48037897_48111079	0/1	t0001	2520	150	16	27	92	3	11	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0002	2520	74	9	18	37	4	6	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0003	2524	58	14	8	26	4	6	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0004	2522	39	13	11	1	3	11	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0005	2524	22	18	2	0	0	2	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0006	2522	10	8	2	0	0	0	copy fasta	SENP1	chr12	48037897	48111079