JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP1_chr12_48037897_48111079	0/0	t0007	2524	10	0	0	10	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0008	2520	6	4	0	2	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0009	2524	4	4	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0010	2528	3	3	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0011	2524	2	2	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0012	2520	2	0	0	2	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0013	2520	2	0	0	2	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0014	2522	1	1	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0015	2522	1	1	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0016	2522	1	1	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0017	2522	1	0	1	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0018	2520	1	1	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0019	2520	1	0	0	1	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0020	2522	1	0	0	0	0	1	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0021	2520	1	0	0	1	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0022	2502	1	0	0	0	0	1	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	1/0	t0023	2522	1	0	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0024	2524	1	1	0	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP1_chr12_48037897_48111079	0/0	t0025	2524	1	0	1	0	0	0	copy fasta	SENP1	chr12	48037897	48111079
SENP2_chr3_185581295_185638551	0/0	t0001	3874	18	5	4	2	3	4	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0002	3875	12	1	5	5	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0003	3843	11	1	2	6	0	2	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0004	3841	9	1	0	7	1	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0005	3842	7	0	2	4	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0006	3844	6	0	1	5	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0007	3861	6	0	3	2	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0008	3861	5	0	0	4	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0009	3844	5	0	2	2	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0010	3863	5	4	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0011	3859	4	0	0	4	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0012	3840	4	0	2	2	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0013	3840	4	1	0	3	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0014	3842	3	0	0	2	1	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0015	3840	3	0	0	3	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0016	3858	3	0	0	2	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0017	3859	3	0	0	2	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0018	3874	3	0	3	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0019	3843	3	0	1	2	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0020	3843	3	0	1	1	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0021	3842	3	2	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0022	3841	3	0	0	3	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0023	3839	3	0	0	2	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0024	3839	3	1	1	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0025	3838	3	1	0	1	1	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0026	3843	2	0	0	2	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0027	3860	2	0	0	2	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0028	3860	2	0	0	1	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0029	3860	2	0	1	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0030	3873	2	2	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0031	3845	2	0	1	1	0	0	copy fasta	SENP2	chr3	185581295	185638551