JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP2_chr3_185581295_185638551	0/0	t0032	3844	2	0	1	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0033	3842	2	0	1	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0034	3841	2	1	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0035	3838	2	1	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0036	3837	2	1	0	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0037	3843	2	0	0	2	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0038	3839	2	0	2	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0039	3837	1	0	0	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0040	3860	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0041	3865	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0042	3840	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0043	3860	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0044	3828	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0045	3839	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0046	3862	1	0	0	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0047	3850	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0048	3868	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0049	3875	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0050	3838	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0051	3828	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0052	3846	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0053	3843	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0054	3839	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0055	3838	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0056	3843	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0057	3842	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0058	3841	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0059	3845	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0060	3840	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0061	3844	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0062	3832	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0063	3844	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0064	3845	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0065	3830	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0066	3830	1	0	0	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0067	3829	1	0	0	0	1	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0068	3842	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0069	3828	1	0	0	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0070	3841	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0071	3831	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0072	3863	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0073	3866	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0074	3863	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0075	3862	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0076	3860	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0077	3859	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0078	3858	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0079	3860	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0080	3854	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0081	3863	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551