JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP2_chr3_185581295_185638551	0/0	t0182	3840	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0183	3828	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0184	3831	1	0	0	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0185	3829	1	0	0	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	1/0	t0186	3827	1	0	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0187	3862	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0188	3839	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0189	3839	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0190	3843	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0191	3842	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0192	3846	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0193	3839	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0194	3850	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0195	3851	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0196	3851	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0197	3842	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0198	3843	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0199	3841	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0200	3840	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0201	3837	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0202	3839	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0203	3838	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0204	3836	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0205	3836	1	0	0	0	0	1	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0206	3839	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0207	3831	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0208	3841	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0209	3841	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0210	3840	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0211	3834	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/1	t0212	3827	1	0	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0213	3828	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0214	3841	1	0	0	0	1	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0215	3840	1	0	0	0	1	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0216	3829	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0217	3843	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0218	3841	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0219	3840	1	0	0	0	1	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0220	3839	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0221	3845	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0222	3842	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0223	3841	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0224	3840	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0225	3841	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0226	3839	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0227	3840	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0228	3825	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0229	3842	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0230	3840	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0231	3840	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551