JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP2_chr3_185581295_185638551	0/0	t0232	3839	1	0	0	1	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0233	3841	1	0	1	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0234	3875	1	0	0	0	1	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0235	3868	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0236	3860	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0237	3875	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0238	3876	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0239	3875	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP2_chr3_185581295_185638551	0/0	t0240	3875	1	1	0	0	0	0	copy fasta	SENP2	chr3	185581295	185638551
SENP3_chr17_7556919_7576969	0/0	t0001	805	26	0	3	19	3	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0002	807	14	1	3	10	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0003	803	14	12	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0004	809	13	0	1	11	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0005	813	10	2	2	2	2	2	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0006	827	10	0	3	6	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	1/0	t0007	843	10	6	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0008	801	8	1	2	5	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0009	813	8	0	1	5	1	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0010	843	8	1	3	3	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0011	843	7	3	0	3	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0012	809	6	0	2	4	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0013	801	6	0	0	6	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0014	815	6	1	1	0	1	3	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0015	819	6	1	2	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0016	841	6	2	0	4	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0017	811	5	0	1	3	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0018	807	5	2	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0019	825	5	0	3	1	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0020	831	5	2	1	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0021	833	5	3	1	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0022	839	5	0	3	0	1	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0023	837	5	1	2	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0024	839	5	3	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0025	803	4	0	0	2	0	2	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0026	811	4	0	0	2	0	2	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0027	809	4	1	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0028	817	4	0	0	4	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0029	829	4	1	2	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0030	835	4	0	1	0	2	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0031	837	4	0	2	0	1	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0032	790	4	0	2	0	1	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0033	792	4	0	0	3	1	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0034	821	3	0	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0035	843	3	0	0	0	0	3	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0036	803	3	0	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0037	805	3	0	3	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0038	825	3	1	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0039	831	3	0	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0040	841	3	0	3	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0041	835	3	0	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969