JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP3_chr17_7556919_7576969	0/0	t0042	837	3	0	2	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0043	839	3	0	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0044	825	3	0	0	3	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0045	807	3	2	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0046	827	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0047	837	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0048	813	2	0	0	0	0	2	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0049	817	2	0	1	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0050	823	2	0	0	1	1	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0051	825	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0052	813	2	1	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0053	795	2	2	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0054	817	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0055	831	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0056	823	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0057	827	2	1	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/1	t0058	829	2	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0059	831	2	1	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0060	833	2	0	0	0	2	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0061	827	2	0	1	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0062	843	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0063	841	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0064	847	2	1	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0065	845	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0066	853	2	1	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0067	833	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0068	808	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0069	812	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0070	822	2	0	0	1	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0071	826	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0072	785	2	1	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0073	813	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0074	819	2	0	0	1	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0075	827	2	1	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0076	839	2	0	0	2	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0077	843	2	2	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0078	843	2	0	2	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0079	815	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0080	817	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0081	823	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0082	827	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0083	825	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0084	829	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0085	831	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0086	839	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0087	832	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0088	809	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0089	807	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0090	815	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0091	843	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969