JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP3_chr17_7556919_7576969	0/0	t0092	789	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0093	789	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0094	808	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0095	815	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0096	813	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0097	816	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0098	822	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0099	827	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0100	833	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0101	833	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0102	843	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0103	837	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0104	843	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0105	811	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0106	817	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0107	809	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0108	811	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0109	827	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0110	831	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0111	776	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0112	837	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0113	797	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0114	809	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0115	807	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0116	811	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0117	805	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0118	803	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0119	816	1	0	0	0	1	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0120	821	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0121	825	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0122	819	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0123	837	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0124	821	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0125	824	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0126	823	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0127	835	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0128	841	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0129	843	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0130	832	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0131	843	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0132	833	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0133	829	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0134	845	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0135	837	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0136	837	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0137	853	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0138	847	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0139	855	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0140	853	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0141	871	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969