JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP3_chr17_7556919_7576969	0/0	t0142	865	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0143	837	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0144	831	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0145	827	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0146	819	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0147	861	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0148	839	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0149	831	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0150	786	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0151	796	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0152	806	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0153	810	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0154	820	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0155	824	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0156	838	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0157	856	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0158	876	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0159	783	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0160	795	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0161	799	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0162	805	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0163	805	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0164	815	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0165	817	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0166	839	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0167	837	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0168	839	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0169	843	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0170	913	1	0	0	1	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0171	843	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0172	843	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0173	810	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0174	823	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0175	830	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0176	805	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0177	805	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0178	809	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0179	811	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0180	813	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0181	819	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0182	839	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0183	828	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0184	839	1	1	0	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0185	835	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0186	839	1	0	1	0	0	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0187	841	1	0	0	0	1	0	copy fasta	SENP3	chr17	7556919	7576969
SENP3_chr17_7556919_7576969	0/0	t0188	833	1	0	0	0	0	1	copy fasta	SENP3	chr17	7556919	7576969
SENP5_chr3_196862920_196939714	0/0	t0001	3982	38	4	5	27	0	2	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	1/0	t0002	3977	30	1	10	8	2	8	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0003	3979	28	2	6	11	3	6	copy fasta	SENP5	chr3	196862920	196939714