Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BAZ2A_chr12_56590596_56635326	0/0	t0047	3240	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0048	3240	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0049	3236	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0050	3238	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0051	3203	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0052	3238	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0053	3246	1	0	0	0	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0054	3207	1	0	1	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0055	3205	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0056	3242	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0057	3244	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0058	3207	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0059	3234	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0060	3250	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0061	3244	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0062	3248	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0063	3250	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0064	3228	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0065	3254	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0066	3234	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0067	3213	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0068	3221	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0069	3260	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0070	3223	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0071	3262	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0072	3264	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0073	3268	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0074	3272	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0075	3222	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0076	3254	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0077	3258	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0078	3240	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0079	3240	1	0	0	0	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0080	3236	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0081	3242	1	0	0	1	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0082	3242	1	0	0	0	0	1	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2A_chr12_56590596_56635326	0/0	t0083	3226	1	1	0	0	0	0	copy fasta	BAZ2A	chr12	56590596	56635326
BAZ2B_chr2_159313979_159621548	0/0	t0001	1639	122	38	14	53	6	11	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	1/1	t0002	1639	84	12	26	32	4	8	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	t0003	1639	2	0	0	2	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	t0004	1639	2	0	2	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	t0005	1639	2	2	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	t0006	1639	1	0	0	0	0	1	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	t0007	1639	1	0	0	1	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	t0008	1639	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BAZ2B_chr2_159313979_159621548	0/0	t0009	1639	1	1	0	0	0	0	copy fasta	BAZ2B	chr2	159313979	159621548
BBC3_chr19_47215824_47236199	0/0	t0001	1267	107	18	12	53	5	19	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0002	1266	78	20	10	34	2	12	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0003	1268	54	5	15	26	2	6	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/1	t0004	1265	46	33	5	5	0	2	copy fasta	BBC3	chr19	47215824	47236199