JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP5_chr3_196862920_196939714	0/0	t0004	3983	17	9	2	3	0	3	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0005	3977	13	13	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0006	3978	13	5	1	4	0	3	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0007	3983	13	3	2	7	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0008	3980	12	0	2	7	0	3	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0009	3983	12	0	9	0	3	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0010	3984	9	0	5	2	0	2	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0011	3978	8	1	1	3	0	3	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0012	3971	7	0	0	7	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0013	3970	6	5	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0014	3984	5	0	3	0	1	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0015	3981	5	1	0	4	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0016	3980	3	0	1	0	2	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0017	3971	3	3	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0018	3982	3	2	1	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0019	3979	3	3	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0020	3984	3	0	1	2	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0021	3971	3	3	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0022	3984	2	2	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0023	3977	2	0	0	2	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0024	3976	2	2	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0025	3971	2	2	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0026	3984	2	0	0	0	0	2	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0027	3970	2	0	2	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0028	3971	2	0	0	2	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0029	3983	2	0	0	0	0	2	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0030	3982	2	0	2	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0031	3986	2	0	1	0	1	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0032	3984	2	2	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0033	3977	2	1	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0034	3979	2	1	1	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0035	3977	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0036	3985	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0037	3977	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0038	3978	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0039	3978	1	0	1	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0040	3979	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0041	3979	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0042	3979	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0043	3979	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0044	3980	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0045	3977	1	0	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0046	3986	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0047	3977	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0048	3987	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0049	3982	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0050	3970	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/1	t0051	3972	1	0	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0052	3972	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0053	3973	1	0	0	0	1	0	copy fasta	SENP5	chr3	196862920	196939714