JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP5_chr3_196862920_196939714	0/0	t0054	3972	1	0	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0055	3983	1	0	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0056	3985	1	0	1	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0057	3975	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0058	3975	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0059	3981	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0060	3985	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0061	3976	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0062	3977	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0063	3977	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0064	3978	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0065	3982	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0066	3986	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0067	3978	1	0	1	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0068	3978	1	0	1	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0069	3979	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0070	3983	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0071	3984	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0072	3980	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0073	3985	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0074	3977	1	0	0	0	0	1	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0075	3972	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0076	3971	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0077	3982	1	0	0	1	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0078	3964	1	0	0	0	1	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0079	3984	1	0	1	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP5_chr3_196862920_196939714	0/0	t0080	3982	1	1	0	0	0	0	copy fasta	SENP5	chr3	196862920	196939714
SENP6_chr6_75596880_75723281	0/0	t0001	3331	93	6	20	51	6	10	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	1/0	t0002	3333	87	23	8	40	2	13	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0003	3333	79	30	9	30	4	6	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0004	3333	29	0	2	26	0	1	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0005	3333	24	4	6	9	3	2	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0006	3333	9	9	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0007	3333	9	0	1	8	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0008	3327	8	0	0	8	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0009	3333	6	6	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0010	3333	3	3	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0011	3333	2	2	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0012	3333	2	0	0	2	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0013	3333	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0014	3333	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0015	3333	1	0	0	0	0	1	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0016	3331	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0017	3333	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0018	3333	1	0	0	0	1	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/1	t0019	3333	1	0	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0020	3331	1	0	0	0	0	1	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0021	3333	1	0	0	1	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0022	3333	1	1	0	0	0	0	copy fasta	SENP6	chr6	75596880	75723281
SENP6_chr6_75596880_75723281	0/0	t0023	3331	1	0	0	1	0	0	copy fasta	SENP6	chr6	75596880	75723281