JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SENP7_chr3_101319205_101518212	0/1	t0001	1823	144	24	32	72	5	10	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	1/0	t0002	1821	105	35	21	30	7	11	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0003	1822	85	17	10	49	2	7	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0004	1822	11	0	5	6	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0005	1821	4	4	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0006	1822	4	0	0	4	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0007	1823	2	2	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0008	1823	2	0	0	2	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0009	1822	2	0	2	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0010	1820	2	2	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0011	1821	2	0	0	2	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0012	1822	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0013	1823	1	0	0	1	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0014	1823	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0015	1821	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0016	1822	1	0	1	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0017	1822	1	0	1	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP7_chr3_101319205_101518212	0/0	t0018	1822	1	1	0	0	0	0	copy fasta	SENP7	chr3	101319205	101518212
SENP8_chr15_72113403_72148692	0/1	t0001	3540	147	26	34	52	9	25	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0002	3540	103	16	18	56	3	10	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0003	3540	79	29	8	41	1	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0004	3540	18	0	0	18	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0005	3541	12	0	2	10	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0006	3544	10	10	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0007	3541	6	6	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0008	3540	3	3	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0009	3540	3	1	2	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0010	3540	3	0	2	0	1	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	1/0	t0011	3540	2	1	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0012	3541	2	1	0	0	0	1	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0013	3540	2	0	1	0	0	1	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0014	3541	1	1	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0015	3540	1	1	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0016	3540	1	1	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0017	3540	1	0	0	1	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0018	3540	1	0	0	1	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0019	3540	1	0	0	1	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0020	3540	1	0	0	0	0	1	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0021	3541	1	0	1	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0022	3540	1	1	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SENP8_chr15_72113403_72148692	0/0	t0023	3540	1	1	0	0	0	0	copy fasta	SENP8	chr15	72113403	72148692
SEPHS1_chr10_13312428_13353293	1/1	t0001	2087	295	76	73	95	16	33	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0002	2087	28	2	5	19	0	2	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0003	2087	19	0	0	19	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0004	2084	18	0	0	18	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0005	2093	6	5	1	0	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0006	2087	3	3	0	0	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0007	2087	1	0	0	1	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0008	2087	1	0	0	0	0	1	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0009	2087	1	1	0	0	0	0	copy fasta	SEPHS1	chr10	13312428	13353293