JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPHS1_chr10_13312428_13353293	0/0	t0010	2087	1	0	0	1	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0011	2087	1	0	1	0	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0012	2087	1	0	0	1	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0013	2087	1	0	0	1	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0014	2087	1	1	0	0	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS1_chr10_13312428_13353293	0/0	t0015	2087	1	0	0	1	0	0	copy fasta	SEPHS1	chr10	13312428	13353293
SEPHS2_chr16_30438631_30450874	1/1	t0001	898	253	41	67	110	14	19	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	t0002	898	42	2	3	20	2	15	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	t0003	898	36	34	2	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	t0004	898	5	5	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	t0005	898	3	3	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	t0006	898	1	1	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	t0007	898	1	1	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPHS2_chr16_30438631_30450874	0/0	t0008	898	1	1	0	0	0	0	copy fasta	SEPHS2	chr16	30438631	30450874
SEPSECS_chr4_25115014_25165449	1/0	t0001	3998	199	29	34	114	4	17	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/1	t0002	3998	87	6	19	39	6	16	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0003	3998	62	17	10	27	1	7	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0004	3998	47	1	12	24	3	7	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0005	3998	11	10	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0006	3996	8	8	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0007	4001	6	6	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0008	3998	5	4	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0009	3998	5	4	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0010	3994	3	2	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0011	3998	3	0	0	3	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0012	3998	2	0	0	2	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0013	3998	2	1	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0014	3998	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0015	3998	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0016	3998	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0017	3998	1	0	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0018	3994	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0019	3998	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0020	3998	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0021	3998	1	0	0	0	0	1	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0022	3998	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0023	3998	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0024	3998	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0025	3998	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0026	3998	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0027	3998	1	0	1	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0028	3998	1	1	0	0	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPSECS_chr4_25115014_25165449	0/0	t0029	3998	1	0	0	1	0	0	copy fasta	SEPSECS	chr4	25115014	25165449
SEPTIN10_chr2_109537799_109618966	1/1	t0001	1650	151	18	25	80	7	19	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	t0002	1650	97	26	15	34	4	18	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	t0003	1650	64	1	24	36	0	3	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	t0004	1650	61	33	8	16	3	1	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	t0005	1650	15	13	2	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	t0006	1650	8	3	0	1	0	4	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	t0007	1650	4	4	0	0	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966