JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPTIN10_chr2_109537799_109618966	0/0	t0008	1650	2	0	0	2	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	t0009	1650	1	0	0	0	0	1	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN10_chr2_109537799_109618966	0/0	t0010	1650	1	0	0	1	0	0	copy fasta	SEPTIN10	chr2	109537799	109618966
SEPTIN11_chr4_76944752_77043615	0/0	t0001	4256	88	21	13	34	4	16	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0002	4256	77	3	14	50	3	7	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/1	t0003	4256	38	8	9	13	2	5	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	1/0	t0004	4256	30	3	7	13	2	4	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0005	4256	28	0	6	14	2	6	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0006	4256	24	9	3	12	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0007	4250	24	2	1	21	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0008	4252	6	6	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0009	4256	5	5	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0010	4250	5	0	3	2	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0011	4256	4	0	0	4	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0012	4256	4	1	1	0	0	2	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0013	4256	3	3	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0014	4250	3	3	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0015	4256	2	0	0	2	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0016	4256	2	0	0	2	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0017	4256	2	2	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0018	4256	2	2	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0019	4251	2	2	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0020	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0021	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0022	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0023	4256	1	0	0	1	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0024	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0025	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0026	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0027	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0028	4256	1	0	0	0	0	1	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0029	4250	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0030	4256	1	0	0	1	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0031	4256	1	0	0	0	0	1	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0032	4256	1	0	0	1	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0033	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0034	4256	1	0	1	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0035	4256	1	0	0	1	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0036	4256	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0037	4252	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0038	4250	1	1	0	0	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0039	4250	1	0	0	1	0	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN11_chr4_76944752_77043615	0/0	t0040	4256	1	0	0	0	1	0	copy fasta	SEPTIN11	chr4	76944752	77043615
SEPTIN12_chr16_4772606_4793345	1/0	t0001	280	273	80	51	106	11	24	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/1	t0002	280	143	12	26	78	5	21	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	t0003	280	4	4	0	0	0	0	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN12_chr16_4772606_4793345	0/0	t0004	280	2	0	1	0	0	1	copy fasta	SEPTIN12	chr16	4772606	4793345
SEPTIN14_chr7_55788540_55867752	0/0	t0001	2454	91	14	7	60	2	8	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0002	2453	60	4	10	30	5	11	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0003	2453	42	9	4	26	3	0	copy fasta	SEPTIN14	chr7	55788540	55867752