JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPTIN14_chr7_55788540_55867752	0/0	t0004	2454	41	4	15	11	3	8	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	1/1	t0005	2454	33	6	11	9	1	4	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0006	2454	28	25	3	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0007	2454	7	0	2	3	0	2	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0008	2453	6	0	0	5	0	1	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0009	2455	6	1	0	3	0	2	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0010	2454	6	0	3	2	0	1	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0011	2452	5	5	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0012	2455	5	5	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0013	2454	4	1	0	3	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0014	2455	4	0	1	2	0	1	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0015	2454	4	4	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0016	2454	4	0	0	3	0	1	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0017	2454	4	4	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0018	2453	4	0	0	1	1	2	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0019	2453	3	2	1	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0020	2453	3	0	0	3	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0021	2454	3	0	2	0	0	1	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0022	2454	2	0	0	2	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0023	2455	2	0	1	1	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0024	2454	2	2	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0025	2454	2	2	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0026	2454	2	2	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0027	2452	2	2	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0028	2453	2	0	1	1	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0029	2453	1	0	1	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0030	2452	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0031	2455	1	0	0	1	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0032	2455	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0033	2455	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0034	2455	1	0	0	1	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0035	2452	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0036	2454	1	0	1	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0037	2454	1	0	0	1	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0038	2454	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0039	2454	1	1	0	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0040	2454	1	0	0	0	1	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN14_chr7_55788540_55867752	0/0	t0041	2453	1	0	1	0	0	0	copy fasta	SEPTIN14	chr7	55788540	55867752
SEPTIN1_chr16_30373135_30387561	1/1	t0001	319	301	85	71	96	12	35	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	t0002	319	2	0	0	2	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	t0003	319	2	0	1	0	0	1	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	t0004	319	1	0	0	1	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	t0005	319	1	0	0	1	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	t0006	319	1	1	0	0	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	t0007	319	1	0	0	1	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN1_chr16_30373135_30387561	0/0	t0008	319	1	0	0	1	0	0	copy fasta	SEPTIN1	chr16	30373135	30387561
SEPTIN2_chr2_241310925_241359027	0/0	t0001	2166	98	7	10	67	4	10	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0002	2166	61	6	10	33	2	10	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	1/0	t0003	2166	49	16	6	16	1	9	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0004	2166	42	0	16	22	0	4	copy fasta	SEPTIN2	chr2	241310925	241359027