JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPTIN2_chr2_241310925_241359027	0/0	t0005	2166	34	0	0	32	2	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0006	2166	30	11	14	0	3	2	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/1	t0007	2166	29	1	6	15	1	5	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0008	2166	8	6	2	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0009	2162	5	0	0	5	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0010	2166	5	5	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0011	2166	5	5	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0012	2166	5	2	3	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0013	2166	4	4	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0014	2166	4	4	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0015	2166	4	4	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0016	2166	4	4	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0017	2166	3	3	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0018	2166	2	2	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0019	2166	2	2	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0020	2166	2	0	1	1	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0021	2166	2	2	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0022	2166	1	1	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0023	2166	1	0	0	1	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0024	2166	1	0	1	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0025	2166	1	0	0	0	0	1	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0026	2166	1	0	1	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0027	2166	1	0	0	0	0	1	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0028	2166	1	1	0	0	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0029	2166	1	0	0	0	1	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0030	2166	1	0	0	1	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN2_chr2_241310925_241359027	0/0	t0031	2166	1	0	0	1	0	0	copy fasta	SEPTIN2	chr2	241310925	241359027
SEPTIN3_chr22_41964443_42003221	1/1	t0001	1509	356	93	71	130	18	42	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	t0002	1509	2	0	2	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	t0003	1509	1	0	1	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN3_chr22_41964443_42003221	0/0	t0004	1509	1	1	0	0	0	0	copy fasta	SEPTIN3	chr22	41964443	42003221
SEPTIN4_chr17_58515256_58549328	1/1	t0001	313	358	90	70	144	14	38	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	t0002	313	1	1	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN4_chr17_58515256_58549328	0/0	t0003	313	1	1	0	0	0	0	copy fasta	SEPTIN4	chr17	58515256	58549328
SEPTIN5_chr22_19709503_19728319	1/1	t0001	922	368	78	69	160	15	44	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	t0002	922	5	5	0	0	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	t0003	922	5	4	1	0	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	t0004	922	3	0	0	0	3	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	t0005	922	1	0	0	1	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	t0006	922	1	0	0	1	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN5_chr22_19709503_19728319	0/0	t0007	922	1	1	0	0	0	0	copy fasta	SEPTIN5	chr22	19709503	19728319
SEPTIN6_chrX_119611945_119698168	0/0	t0001	3206	73	16	14	34	2	7	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0002	3208	28	14	5	7	0	2	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	1/0	t0003	3212	18	0	1	13	3	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0004	3210	18	5	2	9	1	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0005	3202	11	11	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0006	3212	10	1	4	0	0	5	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0007	3194	7	5	2	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0008	3210	5	0	1	3	0	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0009	3207	5	1	1	3	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168