JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPTIN6_chrX_119611945_119698168	0/0	t0010	3204	5	1	1	2	0	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0011	3209	4	1	0	2	0	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0012	3207	4	1	1	2	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0013	3205	4	0	3	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0014	3205	3	0	0	0	0	3	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0015	3214	3	0	1	2	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0016	3208	3	0	0	3	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0017	3193	3	3	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0018	3196	3	2	1	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0019	3192	3	3	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0020	3203	2	0	2	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0021	3216	2	0	0	2	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0022	3206	2	0	0	0	0	2	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0023	3196	2	2	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0024	3214	2	1	0	0	0	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/1	t0025	3202	2	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0026	3215	1	0	0	0	0	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0027	3223	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0028	3212	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0029	3206	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0030	3203	1	1	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0031	3192	1	1	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0032	3195	1	1	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0033	3205	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0034	3202	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0035	3212	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0036	3209	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0037	3214	1	0	1	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0038	3222	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0039	3218	1	0	0	0	0	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0040	3192	1	1	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0041	3217	1	0	0	0	0	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0042	3213	1	0	0	0	1	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0043	3201	1	1	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0044	3211	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0045	3214	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0046	3228	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0047	3202	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0048	3200	1	1	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0049	3198	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0050	3209	1	0	1	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0051	3204	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0052	3213	1	0	0	1	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0053	3212	1	0	0	0	0	1	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0054	3205	1	1	0	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN6_chrX_119611945_119698168	0/0	t0055	3206	1	0	1	0	0	0	copy fasta	SEPTIN6	chrX	119611945	119698168
SEPTIN7_chr7_35796057_35912110	0/1	t0001	2970	95	10	32	37	4	11	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0002	2969	76	29	6	38	1	2	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0003	2969	36	2	8	17	4	5	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	1/0	t0004	2971	16	15	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110