JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPTIN7_chr7_35796057_35912110	0/0	t0005	2970	15	5	4	0	0	6	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0006	2970	12	1	0	11	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0007	2970	9	1	1	6	0	1	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0008	2971	9	9	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0009	2970	9	0	0	9	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0010	2970	8	0	1	7	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0011	2970	8	8	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0012	2970	8	0	0	8	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0013	2970	6	5	1	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0014	2969	4	0	0	4	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0015	2971	3	0	1	2	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0016	2970	3	0	0	3	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0017	2969	2	0	0	2	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0018	2969	2	0	1	1	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0019	2970	2	2	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0020	2970	2	0	2	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0021	2970	2	0	0	2	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0022	2971	2	2	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0023	2969	1	0	1	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0024	2971	1	1	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0025	2969	1	0	0	1	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0026	2971	1	0	1	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0027	2969	1	0	0	1	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0028	2970	1	0	0	1	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0029	2969	1	1	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0030	2969	1	0	1	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0031	2969	1	0	0	0	0	1	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0032	2969	1	0	0	1	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0033	2970	1	0	0	1	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0034	2970	1	0	0	0	0	1	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0035	2970	1	0	0	1	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0036	2970	1	0	0	1	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0037	2970	1	0	0	0	0	1	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0038	2970	1	1	0	0	0	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN7_chr7_35796057_35912110	0/0	t0039	2970	1	0	0	0	1	0	copy fasta	SEPTIN7	chr7	35796057	35912110
SEPTIN8_chr5_132745819_132782239	0/0	t0001	1300	174	58	23	87	0	6	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	1/1	t0002	1300	110	10	29	46	4	19	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	t0003	1294	12	11	1	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	t0004	1300	11	10	1	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	t0005	1300	9	0	0	9	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	t0006	1300	6	0	0	5	0	1	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	t0007	1300	2	0	2	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	t0008	1300	1	1	0	0	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN8_chr5_132745819_132782239	0/0	t0009	1300	1	0	0	1	0	0	copy fasta	SEPTIN8	chr5	132745819	132782239
SEPTIN9_chr17_77276499_77505593	0/0	t0001	1974	32	0	14	11	0	7	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0002	1974	21	10	6	0	1	4	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0003	1974	5	0	0	4	0	1	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0004	1974	5	5	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0005	1974	5	1	0	0	0	4	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0006	1974	4	2	0	1	0	1	copy fasta	SEPTIN9	chr17	77276499	77505593