JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPTIN9_chr17_77276499_77505593	0/0	t0007	1974	4	3	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0008	1974	3	3	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0009	1974	3	2	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0010	1974	3	3	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0011	1974	3	2	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0012	1974	3	3	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0013	1974	3	1	2	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	1/0	t0014	1973	2	0	0	0	1	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0015	1974	2	1	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0016	1974	2	1	0	0	1	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0017	1974	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0018	1974	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0019	1974	2	0	0	0	0	2	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0020	1974	2	0	1	1	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0021	1974	2	1	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0022	1973	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0023	1974	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0024	1973	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0025	1973	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0026	1973	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0027	1974	1	0	0	0	1	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0028	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0029	1974	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0030	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0031	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0032	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0033	1974	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0034	1974	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0035	1974	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0036	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0037	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/1	t0038	1974	1	0	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0039	1974	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0040	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0041	1973	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0042	1973	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0043	1973	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0044	1973	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0045	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0046	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0047	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0048	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0049	1973	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0050	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0051	1974	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0052	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0053	1974	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0054	1974	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0055	1974	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0056	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593