Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BBC3_chr19_47215824_47236199	1/0	t0005	1265	24	3	8	5	5	2	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0006	1273	24	1	0	20	0	3	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0007	1274	18	0	0	18	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0008	1267	8	8	0	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0009	1271	8	0	4	4	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0010	1266	5	0	0	5	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0011	1276	4	0	0	4	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0012	1265	3	0	2	0	1	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0013	1266	3	0	3	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0014	1267	3	0	0	3	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0015	1268	3	0	2	0	0	1	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0016	1266	3	0	1	2	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0017	1268	2	0	2	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0018	1267	2	0	1	0	0	1	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0019	1273	2	0	0	2	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0020	1265	1	1	0	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0021	1267	1	0	0	0	1	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0022	1265	1	1	0	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0023	1267	1	0	1	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0024	1266	1	0	0	1	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0025	1266	1	0	0	0	0	1	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0026	1265	1	1	0	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0027	1266	1	1	0	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0028	1266	1	1	0	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0029	1265	1	0	0	1	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0030	1267	1	0	1	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0031	1268	1	0	0	1	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0032	1267	1	0	1	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0033	1268	1	1	0	0	0	0	copy fasta	BBC3	chr19	47215824	47236199
BBC3_chr19_47215824_47236199	0/0	t0034	1271	1	0	0	0	0	1	copy fasta	BBC3	chr19	47215824	47236199
BBIP1_chr10_110893730_110924180	1/0	t0001	1747	146	36	18	75	0	16	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/1	t0002	1746	119	11	32	50	10	15	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0003	1748	101	17	5	71	2	6	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0004	1747	13	2	0	5	0	6	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0005	1747	12	12	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0006	1744	7	4	2	0	1	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0007	1748	3	3	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0008	1747	3	1	2	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0009	1748	2	2	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0010	1747	2	0	0	0	0	2	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0011	1748	1	0	0	1	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0012	1747	1	0	1	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0013	1746	1	0	0	0	1	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0014	1747	1	1	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0015	1748	1	1	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0016	1748	1	1	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0017	1748	1	0	0	1	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0018	1748	1	0	0	0	0	1	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0019	1747	1	1	0	0	0	0	copy fasta	BBIP1	chr10	110893730	110924180
BBIP1_chr10_110893730_110924180	0/0	t0020	1747	1	0	0	1	0	0	copy fasta	BBIP1	chr10	110893730	110924180