JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPTIN9_chr17_77276499_77505593	0/0	t0057	1974	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0058	1974	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77276499_77505593	0/0	t0059	1974	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77276499	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0001	2746	40	0	16	10	0	14	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0002	2746	19	9	6	0	1	3	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0003	2746	8	8	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0004	2746	5	0	0	2	0	3	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0005	2746	5	3	0	1	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0006	2746	4	3	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0007	2746	4	4	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	1/0	t0008	2745	3	0	1	0	1	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0009	2746	3	2	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0010	2746	3	1	2	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0011	2745	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0012	2745	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0013	2746	2	1	0	0	1	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0014	2746	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0015	2746	2	0	0	2	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0016	2746	2	0	0	0	0	2	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0017	2746	2	0	1	1	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0018	2746	2	1	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0019	2746	2	1	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0020	2746	2	0	1	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0021	2746	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0022	2745	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0023	2746	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0024	2746	2	2	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0025	2746	1	0	0	0	1	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0026	2745	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0027	2745	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0028	2745	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0029	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0030	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0031	2746	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0032	2747	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0033	2747	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0034	2745	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0035	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0036	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0037	2746	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0038	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0039	2746	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0040	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0041	2747	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0042	2746	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0043	2746	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0044	2746	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0045	2746	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0046	2746	1	0	1	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0047	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593