JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SEPTIN9_chr17_77314518_77505593	0/1	t0048	2746	1	0	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0049	2746	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0050	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0051	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0052	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0053	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0054	2747	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0055	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0056	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0057	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0058	2746	1	1	0	0	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0059	2746	1	0	0	0	0	1	copy fasta	SEPTIN9	chr17	77314518	77505593
SEPTIN9_chr17_77314518_77505593	0/0	t0060	2746	1	0	0	1	0	0	copy fasta	SEPTIN9	chr17	77314518	77505593
SERAC1_chr6_158104519_158173262	1/0	t0001	1971	128	16	23	62	5	21	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/1	t0002	1971	95	19	11	55	3	6	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0003	1971	81	19	10	37	3	12	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0004	1971	12	0	6	2	2	2	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0005	1971	11	0	7	0	1	3	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0006	1967	8	8	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0007	1967	6	5	1	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0008	1971	5	4	1	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0009	1967	3	3	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0010	1965	3	3	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0011	1971	2	0	0	2	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0012	1971	2	2	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0013	1971	1	0	0	1	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0014	1971	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0015	1971	1	0	0	1	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0016	1971	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0017	1971	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0018	1971	1	0	1	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0019	1971	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0020	1971	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0021	1969	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERAC1_chr6_158104519_158173262	0/0	t0022	1971	1	1	0	0	0	0	copy fasta	SERAC1	chr6	158104519	158173262
SERBP1_chr1_67402810_67435402	0/0	t0001	5498	41	1	4	26	4	6	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0002	5500	34	0	5	20	1	8	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0003	5498	30	3	5	19	1	2	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/1	t0004	5502	22	1	6	6	2	6	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0005	5504	15	0	4	8	0	3	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0006	5497	12	11	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0007	5508	11	0	5	4	2	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0008	5500	10	6	2	0	0	2	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0009	5506	9	1	2	6	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0010	5501	8	0	4	0	1	3	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0011	5504	7	5	0	2	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0012	5498	7	0	0	7	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0013	5502	7	3	3	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0014	5478	6	6	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0015	5508	5	0	0	3	0	2	copy fasta	SERBP1	chr1	67402810	67435402