JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERBP1_chr1_67402810_67435402	0/0	t0016	5508	5	1	4	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0017	5477	5	5	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0018	5498	5	5	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0019	5498	5	0	0	5	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0020	5496	4	0	0	4	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0021	5506	4	0	1	0	3	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0022	5506	4	0	4	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0023	5510	4	0	1	2	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0024	5496	4	3	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0025	5500	4	0	1	2	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	1/0	t0026	5500	4	2	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0027	5496	3	0	2	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0028	5501	3	0	3	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0029	5496	3	0	0	2	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0030	5508	2	2	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0031	5510	2	0	0	2	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0032	5498	2	0	0	2	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0033	5500	2	0	0	2	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0034	5500	2	2	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0035	5516	2	2	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0036	5498	2	0	0	0	0	2	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0037	5512	2	0	0	2	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0038	5502	2	2	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0039	5504	2	1	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0040	5500	2	2	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0041	5500	2	0	0	0	2	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0042	5498	2	0	0	2	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0043	5501	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0044	5495	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0045	5510	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0046	5504	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0047	5508	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0048	5512	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0049	5502	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0050	5500	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0051	5499	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0052	5500	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0053	5504	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0054	5508	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0055	5506	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0056	5507	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0057	5492	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0058	5498	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0059	5499	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0060	5512	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0061	5516	1	1	0	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0062	5482	1	0	1	0	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0063	5484	1	0	0	0	0	1	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0064	5497	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402
SERBP1_chr1_67402810_67435402	0/0	t0065	5500	1	0	0	1	0	0	copy fasta	SERBP1	chr1	67402810	67435402