JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERF1B_chr5_70020251_70048113	0/0	t0012	1575	1	1	0	0	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0013	1575	1	1	0	0	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0014	1575	1	1	0	0	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0015	1575	1	1	0	0	0	0	copy fasta	SERF1B	chr5	70020251	70048113
SERF1B_chr5_70020251_70048113	0/0	t0016	1575	1	0	0	0	0	1	copy fasta	SERF1B	chr5	70020251	70048113
SERF2_chr15_43787320_43801079	1/1	t0001	2364	355	86	52	163	10	42	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0002	2364	8	0	8	0	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0003	2364	5	0	0	5	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0004	2364	4	0	0	4	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0005	2364	4	3	1	0	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0006	2364	2	0	0	2	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0007	2364	2	2	0	0	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0008	2364	2	2	0	0	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0009	2364	1	1	0	0	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0010	2364	1	0	0	1	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0011	2364	1	0	1	0	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0012	2353	1	0	0	1	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0013	2364	1	0	0	0	0	1	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0014	2364	1	0	0	0	0	1	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0015	2364	1	0	0	1	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0016	2364	1	0	0	1	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0017	2364	1	0	1	0	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERF2_chr15_43787320_43801079	0/0	t0018	2364	1	0	1	0	0	0	copy fasta	SERF2	chr15	43787320	43801079
SERGEF_chr11_17783048_18018047	1/0	t0001	75	134	60	21	36	4	12	copy fasta	SERGEF	chr11	17783048	18018047
SERGEF_chr11_17783048_18018047	0/1	t0002	75	92	16	21	32	4	18	copy fasta	SERGEF	chr11	17783048	18018047
SERHL2_chr22_42548956_42579382	0/0	t0001	393	260	61	34	137	5	23	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/1	t0002	393	134	15	39	55	7	17	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	1/0	t0003	393	11	1	6	0	2	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0004	393	5	2	0	3	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0005	393	4	4	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0006	401	4	0	0	4	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0007	393	2	2	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0008	393	2	1	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0009	393	2	0	0	2	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0010	393	2	1	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0011	393	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0012	393	1	0	0	1	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0013	393	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0014	393	1	0	0	0	0	1	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0015	393	1	1	0	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERHL2_chr22_42548956_42579382	0/0	t0016	393	1	0	1	0	0	0	copy fasta	SERHL2	chr22	42548956	42579382
SERINC1_chr6_122438351_122476807	0/0	t0001	1764	147	42	28	61	4	12	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/1	t0002	1764	115	13	23	63	4	11	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	1/0	t0003	1764	60	22	8	26	3	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0004	1764	11	0	0	11	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0005	1764	8	0	3	1	2	2	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0006	1764	6	0	0	6	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0007	1764	5	5	0	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0008	1764	2	0	0	0	2	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0009	1764	2	2	0	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807