JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERINC1_chr6_122438351_122476807	0/0	t0010	1764	2	0	1	0	0	1	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0011	1764	1	1	0	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0012	1764	1	0	1	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0013	1764	1	1	0	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0014	1764	1	1	0	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0015	1764	1	1	0	0	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0016	1764	1	0	0	1	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0017	1764	1	0	0	0	1	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC1_chr6_122438351_122476807	0/0	t0018	1764	1	0	0	1	0	0	copy fasta	SERINC1	chr6	122438351	122476807
SERINC2_chr1_31408213_31439678	0/0	t0001	533	100	13	23	47	3	14	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/1	t0002	533	93	8	30	31	10	13	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0003	533	48	0	3	35	1	9	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0004	533	45	20	3	21	0	1	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0005	533	18	16	2	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	1/0	t0006	533	14	7	2	3	0	1	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0007	533	14	14	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0008	533	11	0	2	7	0	2	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0009	533	10	8	1	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0010	533	6	0	2	1	0	3	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0011	533	3	3	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0012	533	1	0	0	0	0	1	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0013	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0014	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0015	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0016	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0017	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0018	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0019	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0020	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0021	533	1	1	0	0	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0022	520	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0023	533	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0024	533	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC2_chr1_31408213_31439678	0/0	t0025	533	1	0	0	1	0	0	copy fasta	SERINC2	chr1	31408213	31439678
SERINC3_chr20_44492441_44527070	1/0	t0001	2975	186	33	51	78	5	18	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0002	2974	31	12	2	11	0	6	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/1	t0003	2974	19	3	9	0	1	5	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0004	2975	15	9	2	1	2	1	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0005	2974	11	2	1	8	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0006	2971	9	5	2	0	2	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0007	2974	9	9	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0008	2975	6	5	1	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0009	2973	5	3	0	2	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0010	2974	2	2	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0011	2975	2	0	0	2	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0012	2974	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0013	2975	1	0	0	1	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0014	2975	1	0	0	1	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0015	2975	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070
SERINC3_chr20_44492441_44527070	0/0	t0016	2974	1	1	0	0	0	0	copy fasta	SERINC3	chr20	44492441	44527070