JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERINC4_chr15_43789162_43805220	1/1	t0001	1073	359	88	48	171	8	42	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0002	1073	8	0	8	0	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0003	1073	4	3	1	0	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0004	1073	2	0	0	0	0	2	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0005	1073	2	2	0	0	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0006	1073	2	0	0	2	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0007	1073	1	0	0	1	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0008	1073	1	0	0	1	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0009	1073	1	1	0	0	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0010	1073	1	0	0	1	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC4_chr15_43789162_43805220	0/0	t0011	1073	1	0	1	0	0	0	copy fasta	SERINC4	chr15	43789162	43805220
SERINC5_chr5_80133727_80261048	0/0	t0001	5062	43	9	4	26	0	4	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0002	5063	43	7	18	12	1	5	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0003	5064	34	0	4	24	4	2	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/1	t0004	5073	21	2	9	5	2	2	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0005	5065	14	2	3	6	0	3	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0006	5063	10	3	4	0	3	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0007	5064	8	5	2	0	1	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0008	5067	7	6	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0009	5064	5	4	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0010	5064	4	4	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0011	5074	4	0	4	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0012	5077	4	0	3	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0013	5053	3	3	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0014	5062	3	0	0	3	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0015	5081	3	3	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0016	5066	3	1	0	2	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0017	5060	3	0	3	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0018	5060	2	0	2	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0019	5066	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0020	5072	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0021	5048	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0022	5062	2	1	0	0	1	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0023	5063	2	0	0	0	0	2	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0024	5072	2	0	1	1	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0025	5069	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0026	5063	2	0	1	0	1	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0027	5065	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0028	5063	2	0	0	0	0	2	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0029	5075	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0030	5074	2	2	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0031	5064	1	0	0	0	1	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0032	5062	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0033	5070	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0034	5073	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0035	5045	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0036	5066	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0037	5067	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0038	5065	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0039	5066	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048