JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERINC5_chr5_80133727_80261048	0/0	t0040	5075	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0041	5073	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0042	5076	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0043	5053	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0044	5052	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0045	5067	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0046	5072	1	0	0	0	1	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0047	5070	1	0	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0048	5065	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0049	5069	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0050	5065	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0051	5064	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0052	5065	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0053	5081	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0054	5082	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0055	5079	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0056	5062	1	0	0	1	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0057	5062	1	0	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0058	5063	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0059	5082	1	0	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0060	5052	1	0	0	1	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0061	5062	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0062	5066	1	0	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0063	5060	1	0	0	0	1	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0064	5062	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0065	5062	1	0	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0066	5061	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0067	5064	1	0	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0068	5060	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0069	5061	1	0	0	1	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0070	5061	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0071	5067	1	0	0	1	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0072	5068	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0073	5065	1	0	1	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0074	5064	1	0	0	1	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0075	5064	1	1	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0076	5062	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	0/0	t0077	5064	1	0	0	0	0	1	copy fasta	SERINC5	chr5	80133727	80261048
SERINC5_chr5_80133727_80261048	1/0	t0078	5063	1	0	0	0	0	0	copy fasta	SERINC5	chr5	80133727	80261048
SERP1_chr3_150536998_150551496	0/1	t0001	2821	148	1	27	96	6	17	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0002	2821	132	18	25	63	6	20	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	1/0	t0003	2822	66	26	14	21	1	3	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0004	2823	34	14	10	3	1	6	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0005	2823	15	14	1	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0006	2823	8	7	1	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0007	2820	7	7	0	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0008	2823	4	2	2	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0009	2821	3	0	0	3	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0010	2821	2	0	0	2	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0011	2821	2	2	0	0	0	0	copy fasta	SERP1	chr3	150536998	150551496