JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERP1_chr3_150536998_150551496	0/0	t0012	2821	2	0	0	0	0	2	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0013	2823	1	1	0	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0014	2821	1	0	0	1	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0015	2821	1	1	0	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0016	2823	1	1	0	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0017	2821	1	1	0	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0018	2821	1	0	0	0	0	1	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0019	2822	1	0	0	1	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0020	2821	1	0	0	1	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0021	2823	1	1	0	0	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0022	2821	1	0	0	0	0	1	copy fasta	SERP1	chr3	150536998	150551496
SERP1_chr3_150536998_150551496	0/0	t0023	2821	1	0	0	1	0	0	copy fasta	SERP1	chr3	150536998	150551496
SERP2_chr13_44368824_44402714	0/1	t0001	605	296	73	55	128	10	29	copy fasta	SERP2	chr13	44368824	44402714
SERP2_chr13_44368824_44402714	1/0	t0002	605	23	3	2	10	0	7	copy fasta	SERP2	chr13	44368824	44402714
SERP2_chr13_44368824_44402714	0/0	t0003	608	18	7	11	0	0	0	copy fasta	SERP2	chr13	44368824	44402714
SERP2_chr13_44368824_44402714	0/0	t0004	605	11	9	2	0	0	0	copy fasta	SERP2	chr13	44368824	44402714
SERP2_chr13_44368824_44402714	0/0	t0005	605	4	0	2	0	0	2	copy fasta	SERP2	chr13	44368824	44402714
SERP2_chr13_44368824_44402714	0/0	t0006	605	1	1	0	0	0	0	copy fasta	SERP2	chr13	44368824	44402714
SERP2_chr13_44368824_44402714	0/0	t0007	605	1	1	0	0	0	0	copy fasta	SERP2	chr13	44368824	44402714
SERPINA10_chr14_94275460_94298268	0/0	t0001	3636	135	12	37	62	9	15	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0002	3636	115	21	7	76	2	9	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/1	t0003	3636	71	21	25	9	2	13	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0004	3636	31	0	0	31	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0005	3637	12	10	1	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0006	3636	8	0	0	5	0	3	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0007	3636	6	6	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0008	3636	5	5	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0009	3636	5	5	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0010	3636	5	0	2	0	1	2	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0011	3636	4	3	1	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0012	3636	2	2	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0013	3636	2	2	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0014	3636	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0015	3636	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0016	3636	1	0	1	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0017	3636	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0018	3636	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0019	3636	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0020	3636	1	0	0	1	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0021	3636	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0022	3636	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0023	3636	1	0	0	1	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0024	3636	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0025	3636	1	0	0	1	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0026	3636	1	0	0	1	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0027	3636	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0028	3636	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0029	3636	1	0	0	0	0	1	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0030	3636	1	1	0	0	0	0	copy fasta	SERPINA10	chr14	94275460	94298268
SERPINA10_chr14_94275460_94298268	0/0	t0031	3636	1	0	0	1	0	0	copy fasta	SERPINA10	chr14	94275460	94298268