Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BBLN_chr9_128155265_128168924	1/1	t0001	453	367	73	62	169	17	44	copy fasta	BBLN	chr9	128155265	128168924
BBLN_chr9_128155265_128168924	0/0	t0002	453	16	15	1	0	0	0	copy fasta	BBLN	chr9	128155265	128168924
BBLN_chr9_128155265_128168924	0/0	t0003	453	9	8	1	0	0	0	copy fasta	BBLN	chr9	128155265	128168924
BBLN_chr9_128155265_128168924	0/0	t0004	453	2	2	0	0	0	0	copy fasta	BBLN	chr9	128155265	128168924
BBLN_chr9_128155265_128168924	0/0	t0005	453	1	0	0	0	1	0	copy fasta	BBLN	chr9	128155265	128168924
BBLN_chr9_128155265_128168924	0/0	t0006	453	1	0	0	1	0	0	copy fasta	BBLN	chr9	128155265	128168924
BBOF1_chr14_74014349_74071092	1/1	t0001	1524	193	45	33	92	9	12	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0002	1524	63	1	9	42	2	9	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0003	1524	59	27	6	13	0	13	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0004	1524	46	0	22	15	2	7	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0005	1524	5	5	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0006	1524	4	3	1	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0007	1524	3	2	0	0	0	1	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0008	1525	3	3	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0009	1524	2	2	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0010	1524	2	2	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0011	1524	1	0	0	1	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0012	1524	1	0	0	0	1	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0013	1524	1	0	1	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0014	1524	1	1	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0015	1524	1	0	0	1	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOF1_chr14_74014349_74071092	0/0	t0016	1524	1	1	0	0	0	0	copy fasta	BBOF1	chr14	74014349	74071092
BBOX1_chr11_27035815_27132809	1/1	t0001	872	181	47	30	71	10	21	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0002	872	51	0	10	34	1	6	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0003	872	37	18	12	4	0	3	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0004	873	15	0	2	5	0	8	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0005	872	14	7	3	0	2	2	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0006	872	8	7	1	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0007	872	2	2	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0008	872	2	0	2	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0009	872	2	2	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0010	872	1	0	0	1	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0011	872	1	1	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0012	872	1	0	0	1	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0013	872	1	1	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0014	872	1	0	0	0	1	0	copy fasta	BBOX1	chr11	27035815	27132809
BBOX1_chr11_27035815_27132809	0/0	t0015	872	1	1	0	0	0	0	copy fasta	BBOX1	chr11	27035815	27132809
BBS10_chr12_76339474_76353415	0/1	t0001	1397	291	34	56	165	9	26	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	1/0	t0002	1397	57	15	12	20	3	6	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0003	1397	18	14	4	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0004	1397	14	1	3	0	2	8	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0005	1397	14	14	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0006	1397	7	0	0	4	0	3	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0007	1397	5	5	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0008	1397	4	4	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0009	1397	1	1	0	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0010	1397	1	0	0	1	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0011	1397	1	0	1	0	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0012	1397	1	0	0	1	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS10_chr12_76339474_76353415	0/0	t0013	1397	1	0	0	0	0	1	copy fasta	BBS10	chr12	76339474	76353415