JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERPINB12_chr18_63537369_63574329	0/0	t0022	2462	1	0	1	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0023	2462	1	0	1	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0024	2462	1	1	0	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0025	2462	1	0	0	1	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0026	2463	1	0	0	1	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0027	2462	1	1	0	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0028	2461	1	0	1	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0029	2461	1	1	0	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0030	2462	1	0	0	0	0	1	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0031	2461	1	1	0	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0032	2461	1	0	0	0	0	1	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0033	2462	1	0	1	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0034	2462	1	1	0	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0035	2461	1	1	0	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0036	2461	1	1	0	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0037	2462	1	0	1	0	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0038	2417	1	0	0	1	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0039	2462	1	0	0	0	0	1	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0040	2456	1	0	0	1	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB12_chr18_63537369_63574329	0/0	t0041	2417	1	0	0	1	0	0	copy fasta	SERPINB12	chr18	63537369	63574329
SERPINB13_chr18_63582343_63604192	0/0	t0001	1955	184	25	21	124	6	8	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	1/1	t0002	1955	167	26	34	69	9	27	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0003	1954	22	19	2	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0004	1956	17	1	1	14	0	1	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0005	1954	8	6	1	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0006	1955	8	6	2	0	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0007	1956	5	1	1	3	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0008	1954	4	4	0	0	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0009	1955	3	3	0	0	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0010	1955	3	0	1	0	1	1	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0011	1954	2	2	0	0	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0012	1954	2	0	0	0	0	2	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0013	1954	1	0	0	0	0	1	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0014	1955	1	0	0	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0015	1955	1	0	0	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0016	1955	1	0	0	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0017	1955	1	0	0	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0018	1955	1	0	0	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0019	1955	1	0	0	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0020	1955	1	1	0	0	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0021	1955	1	1	0	0	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0022	1955	1	0	0	0	0	1	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0023	1955	1	0	0	0	0	1	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0024	1955	1	0	0	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0025	1955	1	0	0	1	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0026	1956	1	0	1	0	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB13_chr18_63582343_63604192	0/0	t0027	1954	1	1	0	0	0	0	copy fasta	SERPINB13	chr18	63582343	63604192
SERPINB1_chr6_2827332_2846863	0/1	t0001	1337	294	51	60	147	7	28	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	1/0	t0002	1337	112	21	11	58	6	15	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0003	1339	12	0	3	9	0	0	copy fasta	SERPINB1	chr6	2827332	2846863