JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERPINB1_chr6_2827332_2846863	0/0	t0004	1336	8	7	1	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0005	1338	7	5	2	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0006	1337	7	0	5	0	2	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0007	1337	4	4	0	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0008	1337	3	0	0	3	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0009	1338	3	0	1	2	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0010	1339	3	3	0	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0011	1337	3	3	0	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0012	1338	3	0	1	1	1	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0013	1337	2	0	0	2	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0014	1337	2	0	0	0	1	1	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0015	1337	2	0	1	0	1	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0016	1337	2	0	0	2	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0017	1337	1	0	0	1	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0018	1337	1	0	1	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0019	1337	1	1	0	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0020	1337	1	0	0	1	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0021	1337	1	1	0	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0022	1337	1	1	0	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0023	1336	1	0	0	1	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0024	1337	1	0	0	1	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0025	1337	1	1	0	0	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0026	1337	1	0	0	1	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB1_chr6_2827332_2846863	0/0	t0027	1337	1	0	0	1	0	0	copy fasta	SERPINB1	chr6	2827332	2846863
SERPINB2_chr18_63882705_63908888	1/0	t0001	659	232	54	40	99	11	27	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB2_chr18_63882705_63908888	0/1	t0002	659	136	36	24	61	2	12	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB2_chr18_63882705_63908888	0/0	t0003	659	43	1	4	33	1	4	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB2_chr18_63882705_63908888	0/0	t0004	659	9	7	2	0	0	0	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB2_chr18_63882705_63908888	0/0	t0005	659	3	0	0	0	0	3	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB2_chr18_63882705_63908888	0/0	t0006	659	2	0	0	2	0	0	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB2_chr18_63882705_63908888	0/0	t0007	659	1	0	0	1	0	0	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB2_chr18_63882705_63908888	0/0	t0008	659	1	0	0	1	0	0	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB2_chr18_63882705_63908888	0/0	t0009	659	1	0	0	1	0	0	copy fasta	SERPINB2	chr18	63882705	63908888
SERPINB3_chr18_63650197_63666893	1/1	t0001	535	382	73	64	195	14	34	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0002	535	63	8	11	35	1	8	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0003	535	17	16	0	0	1	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0004	535	3	0	0	3	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0005	535	2	0	2	0	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0006	535	1	0	1	0	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0007	535	1	1	0	0	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0008	535	1	0	0	1	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0009	535	1	0	0	1	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB3_chr18_63650197_63666893	0/0	t0010	535	1	0	0	1	0	0	copy fasta	SERPINB3	chr18	63650197	63666893
SERPINB4_chr18_63632259_63649256	1/1	t0001	535	420	94	67	205	18	34	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	t0002	535	2	0	2	0	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	t0003	535	1	0	0	1	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB4_chr18_63632259_63649256	0/0	t0004	535	1	0	1	0	0	0	copy fasta	SERPINB4	chr18	63632259	63649256
SERPINB5_chr18_63471958_63510085	0/0	t0001	1461	163	12	28	101	8	14	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	1/1	t0002	1459	160	32	28	76	3	19	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0003	1460	22	6	3	4	3	6	copy fasta	SERPINB5	chr18	63471958	63510085