JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERPINB5_chr18_63471958_63510085	0/0	t0004	1460	13	12	1	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0005	1460	11	8	3	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0006	1460	10	1	5	1	2	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0007	1459	6	1	1	4	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0008	1459	4	4	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0009	1460	3	0	0	3	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0010	1460	2	2	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0011	1461	2	0	1	0	0	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0012	1459	2	2	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0013	1459	2	1	1	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0014	1460	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0015	1460	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0016	1459	1	0	0	0	0	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0017	1459	1	0	0	0	0	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0018	1461	1	0	0	0	0	1	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0019	1461	1	0	0	1	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0020	1501	1	0	1	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0021	1461	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0022	1461	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB5_chr18_63471958_63510085	0/0	t0023	1461	1	1	0	0	0	0	copy fasta	SERPINB5	chr18	63471958	63510085
SERPINB6_chr6_2943159_2976567	1/1	t0001	185	381	88	68	171	18	34	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	t0002	185	1	0	1	0	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	t0003	185	1	0	0	1	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB6_chr6_2943159_2976567	0/0	t0004	185	1	0	1	0	0	0	copy fasta	SERPINB6	chr6	2943159	2976567
SERPINB7_chr18_63770418_63810370	1/0	t0001	1053	126	18	20	66	8	13	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0002	1053	90	17	6	58	2	7	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0003	1053	75	15	16	35	5	4	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/1	t0004	1053	54	8	13	22	3	7	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0005	1053	23	5	6	9	0	3	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0006	1053	19	17	2	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0007	1053	15	4	9	2	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0008	1053	9	0	4	3	0	2	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0009	1053	4	4	0	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0010	1053	2	0	0	1	0	1	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0011	1053	2	2	0	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0012	1053	2	0	0	2	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0013	1053	1	1	0	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0014	1053	1	1	0	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0015	1053	1	1	0	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0016	1053	1	1	0	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0017	1053	1	1	0	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0018	1053	1	0	0	1	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0019	1053	1	1	0	0	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0020	1053	1	0	0	0	0	1	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0021	1053	1	0	0	0	0	1	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0022	1053	1	0	0	1	0	0	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB7_chr18_63770418_63810370	0/0	t0023	1053	1	0	0	0	0	1	copy fasta	SERPINB7	chr18	63770418	63810370
SERPINB8_chr18_63965081_63994374	1/0	t0001	2197	188	19	37	98	7	26	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/0	t0002	2206	68	14	9	40	5	0	copy fasta	SERPINB8	chr18	63965081	63994374
SERPINB8_chr18_63965081_63994374	0/1	t0003	2203	47	7	7	25	2	5	copy fasta	SERPINB8	chr18	63965081	63994374