JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERPINB9_chr6_2882270_2908309	0/0	t0010	3012	6	1	2	2	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0011	3013	6	0	0	6	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0012	3012	6	5	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0013	3014	5	0	0	5	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0014	3012	5	3	0	1	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0015	3013	5	1	0	0	0	4	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0016	3014	5	0	0	3	2	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0017	3014	5	0	0	4	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0018	3007	4	4	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0019	3010	4	1	1	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0020	3012	4	3	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0021	3010	3	0	0	3	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0022	3010	3	1	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0023	3012	3	3	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0024	3013	3	0	0	3	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0025	3012	3	0	3	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0026	3011	3	3	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0027	3011	3	3	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0028	3012	3	0	1	1	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0029	3015	3	0	1	0	0	2	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0030	3010	3	0	2	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	1/0	t0031	3013	3	0	1	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0032	3013	3	3	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0033	3011	3	0	0	3	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0034	3010	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0035	3010	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0036	3013	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0037	3010	2	2	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0038	3013	2	0	0	1	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0039	3015	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0040	3013	2	2	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0041	3012	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0042	3011	2	1	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0043	3014	2	1	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0044	3013	2	0	2	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0045	3011	2	0	0	1	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0046	3013	2	0	2	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0047	3012	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0048	3010	2	2	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0049	3013	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0050	3012	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0051	3012	2	0	1	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0052	3013	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0053	3012	2	0	1	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0054	3014	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0055	3014	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0056	3013	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0057	3013	2	0	0	2	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0058	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0059	3014	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309