JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERPINB9_chr6_2882270_2908309	0/0	t0060	3012	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0061	3010	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0062	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0063	3012	1	0	0	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0064	3012	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0065	3014	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0066	3013	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0067	3007	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0068	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0069	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0070	3012	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0071	3014	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0072	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0073	3007	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0074	3011	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0075	3011	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0076	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0077	3014	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0078	3012	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0079	2997	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0080	3009	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0081	3012	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0082	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0083	3011	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0084	3012	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0085	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0086	3014	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0087	2999	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0088	3000	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0089	3001	1	0	0	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0090	3002	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0091	3001	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0092	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0093	3014	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0094	3010	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0095	3012	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0096	3012	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0097	3010	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0098	3014	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0099	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0100	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0101	3014	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0102	3014	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0103	3012	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0104	3011	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0105	3010	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0106	3011	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0107	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0108	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0109	3012	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309