JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERPINB9_chr6_2882270_2908309	0/0	t0110	3011	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0111	3010	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0112	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0113	3010	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0114	3012	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0115	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0116	3014	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0117	3011	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0118	3013	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0119	3007	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0120	3007	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0121	3012	1	0	0	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/1	t0122	3013	1	0	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0123	3013	1	0	0	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0124	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0125	3012	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0126	3012	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0127	3013	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0128	3013	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0129	3012	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0130	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0131	3013	1	0	0	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0132	3014	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0133	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0134	2999	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0135	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0136	3013	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0137	3012	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0138	3011	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0139	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0140	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0141	3012	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0142	3013	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0143	3012	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0144	3011	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0145	3013	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0146	3012	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0147	3013	1	0	0	0	1	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0148	3012	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0149	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0150	3013	1	0	1	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0151	3013	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0152	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0153	3012	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0154	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0155	3013	1	0	0	0	0	1	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0156	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0157	3013	1	0	0	1	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0158	3014	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309
SERPINB9_chr6_2882270_2908309	0/0	t0159	3014	1	1	0	0	0	0	copy fasta	SERPINB9	chr6	2882270	2908309