Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BBS10_chr12_76339474_76353415	0/0	t0014	1397	1	0	0	1	0	0	copy fasta	BBS10	chr12	76339474	76353415
BBS12_chr4_122727704_122749939	0/0	t0001	1106	177	43	32	86	3	13	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	1/1	t0002	1106	133	20	28	60	6	17	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	t0003	1107	24	9	7	0	3	5	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	t0004	1106	15	14	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	t0005	1107	10	9	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	t0006	1106	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	t0007	1107	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	t0008	1107	1	1	0	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	t0009	1106	1	0	0	0	0	1	copy fasta	BBS12	chr4	122727704	122749939
BBS12_chr4_122727704_122749939	0/0	t0010	1106	1	0	1	0	0	0	copy fasta	BBS12	chr4	122727704	122749939
BBS1_chr11_66505635_66538598	0/0	t0001	1587	134	10	19	74	3	28	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/1	t0002	1587	119	51	20	33	7	7	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0003	1587	104	14	17	62	3	8	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0004	1587	7	7	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0005	1587	5	5	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0006	1587	4	0	0	4	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	1/0	t0007	1587	2	1	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0008	1587	2	0	2	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0009	1587	1	1	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0010	1587	1	1	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0011	1587	1	0	0	1	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0012	1587	1	0	0	1	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0013	1597	1	0	0	1	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0014	1587	1	0	0	0	1	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0015	1587	1	1	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0016	1587	1	0	0	0	0	1	copy fasta	BBS1	chr11	66505635	66538598
BBS1_chr11_66505635_66538598	0/0	t0017	1587	1	1	0	0	0	0	copy fasta	BBS1	chr11	66505635	66538598
BBS2_chr16_56479385_56525024	1/1	t0001	539	338	66	59	163	16	32	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	t0002	539	33	2	2	19	0	10	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	t0003	539	14	14	0	0	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	t0004	539	11	1	3	7	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	t0005	539	1	0	0	1	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS2_chr16_56479385_56525024	0/0	t0006	539	1	1	0	0	0	0	copy fasta	BBS2	chr16	56479385	56525024
BBS4_chr15_72681207_72743473	1/0	t0001	908	319	73	54	146	14	31	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0002	908	59	5	9	41	2	2	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0003	912	5	5	0	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0004	908	5	1	3	0	0	1	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0005	908	2	0	2	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0006	908	2	2	0	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0007	908	2	0	0	0	0	2	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0008	908	1	1	0	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/1	t0009	908	1	0	0	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0010	908	1	0	0	1	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS4_chr15_72681207_72743473	0/0	t0011	908	1	1	0	0	0	0	copy fasta	BBS4	chr15	72681207	72743473
BBS5_chr2_169474494_169511655	0/0	t0001	2085	111	17	24	52	6	12	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0002	2134	101	8	8	75	2	8	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/1	t0003	2134	31	10	8	9	0	3	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0004	2134	17	11	1	4	0	1	copy fasta	BBS5	chr2	169474494	169511655
BBS5_chr2_169474494_169511655	0/0	t0005	2136	13	0	1	11	1	0	copy fasta	BBS5	chr2	169474494	169511655