JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERPINE2_chr2_223970045_224044286	0/1	t0002	1033	152	35	27	70	7	12	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0003	1033	4	4	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0004	1033	2	2	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0005	1033	2	2	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0006	1033	2	2	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0007	1033	2	2	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0008	1033	2	0	0	2	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0009	1033	2	0	0	2	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0010	1033	1	1	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0011	1033	1	0	0	1	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0012	1033	1	1	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	1/0	t0013	1033	1	0	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE2_chr2_223970045_224044286	0/0	t0014	1033	1	1	0	0	0	0	copy fasta	SERPINE2	chr2	223970045	224044286
SERPINE3_chr13_51334691_51369735	1/1	t0001	602	300	57	53	149	9	30	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0002	602	88	28	13	35	4	8	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0003	602	24	2	2	14	2	4	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0004	602	6	0	2	3	1	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0005	602	5	5	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0006	602	4	0	1	1	0	2	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0007	602	2	0	2	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0008	602	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0009	602	1	0	1	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINE3_chr13_51334691_51369735	0/0	t0010	602	1	1	0	0	0	0	copy fasta	SERPINE3	chr13	51334691	51369735
SERPINF1_chr17_1757060_1782565	1/1	t0001	182	443	98	82	199	16	46	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF1_chr17_1757060_1782565	0/0	t0002	182	1	0	0	1	0	0	copy fasta	SERPINF1	chr17	1757060	1782565
SERPINF2_chr17_1737871_1760265	0/0	t0001	773	183	40	37	78	9	19	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/1	t0002	773	97	3	10	73	2	8	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0003	774	83	30	17	25	2	9	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0004	774	35	9	5	17	0	4	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0005	775	14	8	2	3	0	1	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0006	775	7	0	5	2	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0007	774	4	0	1	0	2	1	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0008	774	4	0	4	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0009	775	3	0	2	0	0	1	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0010	773	3	3	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0011	773	3	0	2	0	1	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0012	773	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0013	773	1	0	0	1	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0014	773	1	0	0	1	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0015	774	1	0	0	0	0	1	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0016	774	1	0	1	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0017	774	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0018	773	1	0	0	1	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0019	736	1	0	0	1	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPINF2_chr17_1737871_1760265	0/0	t0020	775	1	1	0	0	0	0	copy fasta	SERPINF2	chr17	1737871	1760265
SERPING1_chr11_57592685_57619848	1/1	t0001	328	338	88	72	127	14	35	copy fasta	SERPING1	chr11	57592685	57619848
SERPING1_chr11_57592685_57619848	0/0	t0002	328	3	0	0	3	0	0	copy fasta	SERPING1	chr11	57592685	57619848
SERPING1_chr11_57592685_57619848	0/0	t0003	328	3	0	2	0	0	1	copy fasta	SERPING1	chr11	57592685	57619848
SERPINH1_chr11_75557253_75577783	1/0	t0001	802	188	24	20	131	2	10	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/1	t0002	801	122	29	16	52	5	19	copy fasta	SERPINH1	chr11	75557253	75577783