JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERPINH1_chr11_75557253_75577783	0/0	t0003	802	85	12	27	22	8	16	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0004	802	14	13	0	0	1	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0005	802	5	4	1	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0006	802	4	4	0	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0007	801	3	3	0	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0008	802	3	3	0	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0009	802	2	2	0	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0010	802	2	2	0	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0011	802	1	1	0	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0012	802	1	1	0	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0013	802	1	0	0	1	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0014	802	1	0	1	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0015	801	1	0	0	1	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0016	801	1	0	0	1	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0017	801	1	0	1	0	0	0	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINH1_chr11_75557253_75577783	0/0	t0018	802	1	0	0	0	0	1	copy fasta	SERPINH1	chr11	75557253	75577783
SERPINI1_chr3_167730721_167830569	1/1	t0001	368	232	76	40	78	14	22	copy fasta	SERPINI1	chr3	167730721	167830569
SERPINI2_chr3_167436933_167479042	1/1	t0001	227	229	46	44	96	11	30	copy fasta	SERPINI2	chr3	167436933	167479042
SERPINI2_chr3_167436933_167479042	0/0	t0002	227	104	24	17	56	3	4	copy fasta	SERPINI2	chr3	167436933	167479042
SERPINI2_chr3_167436933_167479042	0/0	t0003	227	8	8	0	0	0	0	copy fasta	SERPINI2	chr3	167436933	167479042
SERPINI2_chr3_167436933_167479042	0/0	t0004	227	6	3	3	0	0	0	copy fasta	SERPINI2	chr3	167436933	167479042
SERPINI2_chr3_167436933_167479042	0/0	t0005	227	5	5	0	0	0	0	copy fasta	SERPINI2	chr3	167436933	167479042
SERTAD1_chr19_40416589_40430992	1/0	t0001	1374	209	24	47	93	10	34	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0002	1375	48	12	13	21	1	1	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0003	1374	29	29	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0004	1375	19	6	1	5	3	4	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/1	t0005	1375	13	0	3	3	0	6	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0006	1375	8	0	8	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0007	1376	7	7	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0008	1373	5	0	0	3	1	1	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0009	1374	4	0	0	1	3	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0010	1374	4	4	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0011	1375	3	0	0	3	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0012	1375	3	3	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0013	1374	2	0	0	1	0	1	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0014	1374	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0015	1373	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0016	1374	1	0	1	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0017	1374	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0018	1373	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0019	1375	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0020	1374	1	0	0	1	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0021	1373	1	0	1	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0022	1374	1	0	0	1	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0023	1375	1	0	0	0	0	1	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0024	1374	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0025	1376	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0026	1376	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD1_chr19_40416589_40430992	0/0	t0027	1374	1	1	0	0	0	0	copy fasta	SERTAD1	chr19	40416589	40430992
SERTAD2_chr2_64626621_64658913	0/0	t0001	4604	132	23	18	72	3	16	copy fasta	SERTAD2	chr2	64626621	64658913