JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERTAD2_chr2_64626621_64658913	0/1	t0002	4597	88	2	17	57	7	4	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0003	4604	46	1	9	28	2	6	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0004	4605	29	4	4	11	0	10	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0005	4604	18	15	3	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0006	4603	15	13	1	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0007	4597	10	0	7	3	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0008	4597	8	0	0	8	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0009	4601	6	6	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0010	4605	6	0	1	2	2	1	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0011	4605	5	5	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0012	4604	4	1	3	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0013	4604	4	4	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0014	4604	4	2	0	1	0	1	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0015	4605	4	0	1	2	0	1	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0016	4605	3	0	0	3	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0017	4604	3	0	0	2	0	1	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0018	4605	3	3	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0019	4595	3	3	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0020	4604	3	3	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0021	4603	2	2	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0022	4604	2	0	0	2	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0023	4598	2	0	0	1	1	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0024	4597	2	0	1	0	1	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0025	4601	2	1	1	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	1/0	t0026	4605	1	0	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0027	4604	1	0	1	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0028	4603	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0029	4604	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0030	4604	1	1	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0031	4603	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0032	4604	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0033	4604	1	0	0	0	0	1	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0034	4604	1	1	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0035	4604	1	0	1	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0036	4597	1	0	0	0	0	1	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0037	4597	1	0	1	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0038	4604	1	1	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0039	4605	1	1	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0040	4604	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0041	4604	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0042	4604	1	1	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0043	4597	1	1	0	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0044	4605	1	0	1	0	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD2_chr2_64626621_64658913	0/0	t0045	4597	1	0	0	1	0	0	copy fasta	SERTAD2	chr2	64626621	64658913
SERTAD3_chr19_40435844_40449335	1/0	t0001	774	215	24	41	123	11	15	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/1	t0002	771	47	14	6	15	1	10	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0003	770	40	15	6	2	3	14	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0004	771	18	18	0	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0005	774	9	0	9	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0006	770	7	7	0	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335