JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERTAD3_chr19_40435844_40449335	0/0	t0007	774	7	7	0	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0008	775	6	2	2	2	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0009	772	5	0	1	0	3	1	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0010	771	4	0	2	0	0	2	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0011	766	4	2	0	0	0	2	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0012	770	2	1	0	1	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0013	771	2	2	0	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0014	774	2	0	0	2	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0015	774	2	0	0	2	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0016	778	2	2	0	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0017	772	1	0	1	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0018	774	1	0	0	1	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0019	774	1	0	0	1	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0020	775	1	0	0	1	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0021	770	1	1	0	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD3_chr19_40435844_40449335	0/0	t0022	766	1	1	0	0	0	0	copy fasta	SERTAD3	chr19	40435844	40449335
SERTAD4_chr1_210227796_210251255	1/1	t0001	4152	97	22	18	38	6	11	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0002	4154	65	7	15	29	4	10	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0003	4152	56	0	22	29	4	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0004	4153	53	8	4	29	2	10	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0005	4148	37	0	0	35	0	2	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0006	4149	11	0	0	11	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0007	4139	10	8	2	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0008	4154	8	8	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0009	4144	7	7	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0010	4153	6	5	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0011	4152	6	0	4	0	2	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0012	4154	5	1	1	0	0	3	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0013	4153	5	0	2	3	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0014	4155	4	4	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0015	4152	4	4	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0016	4155	3	3	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0017	4155	3	0	0	2	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0018	4155	3	3	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0019	4153	3	3	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0020	4152	3	2	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0021	4153	2	0	2	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0022	4154	2	0	0	1	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0023	4154	2	2	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0024	4154	2	2	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0025	4153	2	2	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0026	4116	2	2	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0027	4153	1	1	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0028	4153	1	0	0	0	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0029	4155	1	0	0	1	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0030	4155	1	0	0	1	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0031	4154	1	0	0	1	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0032	4152	1	0	0	1	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0033	4155	1	0	0	0	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0034	4154	1	0	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255