JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERTAD4_chr1_210227796_210251255	0/0	t0035	4153	1	0	0	1	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0036	4153	1	0	0	0	0	1	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0037	4152	1	1	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0038	4152	1	0	0	1	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0039	4152	1	1	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0040	4152	1	1	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0041	4152	1	1	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0042	4152	1	1	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0043	4152	1	0	1	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0044	4152	1	0	0	1	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTAD4_chr1_210227796_210251255	0/0	t0045	4155	1	1	0	0	0	0	copy fasta	SERTAD4	chr1	210227796	210251255
SERTM1_chr13_36669020_36702839	0/1	t0001	2775	146	10	23	86	5	21	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0002	2775	67	11	15	31	2	8	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0003	2773	61	8	7	39	0	7	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0004	2775	19	2	2	14	1	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0005	2777	9	0	1	7	0	1	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0006	2781	9	8	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0007	2775	8	0	0	8	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0008	2777	8	8	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0009	2776	8	1	2	0	5	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	1/0	t0010	2776	7	5	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0011	2775	6	0	6	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0012	2777	5	3	1	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0013	2777	5	5	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0014	2773	4	4	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0015	2779	4	4	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0016	2773	4	3	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0017	2773	3	1	1	0	0	1	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0018	2771	3	0	0	0	2	1	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0019	2780	3	0	2	0	1	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0020	2775	3	0	1	0	2	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0021	2773	2	2	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0022	2777	2	0	0	2	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0023	2773	2	1	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0024	2775	2	0	0	2	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0025	2773	2	1	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0026	2775	2	2	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0027	2793	2	2	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0028	2767	2	2	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0029	2773	2	1	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0030	2777	2	0	2	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0031	2775	2	0	0	0	0	2	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0032	2775	1	0	0	0	0	1	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0033	2773	1	0	0	0	0	1	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0034	2777	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0035	2775	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0036	2779	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0037	2773	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0038	2775	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0039	2777	1	0	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839