JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SERTM1_chr13_36669020_36702839	0/0	t0040	2771	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0041	2774	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0042	2779	1	0	0	0	0	1	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0043	2777	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0044	2779	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0045	2773	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0046	2775	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0047	2779	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0048	2799	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0049	2807	1	0	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0050	2798	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0051	2777	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0052	2791	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0053	2780	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0054	2777	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0055	2775	1	0	0	1	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0056	2777	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0057	2777	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0058	2781	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0059	2775	1	0	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0060	2778	1	0	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0061	2780	1	0	0	0	0	1	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0062	2775	1	0	0	0	0	1	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0063	2775	1	0	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0064	2773	1	0	1	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM1_chr13_36669020_36702839	0/0	t0065	2787	1	1	0	0	0	0	copy fasta	SERTM1	chr13	36669020	36702839
SERTM2_chrX_111506645_111527399	1/0	t0001	4340	186	18	34	98	11	24	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0002	4340	27	26	1	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0003	4340	23	23	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0004	4340	5	0	2	0	0	3	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0005	4340	4	4	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/1	t0006	4340	3	0	1	0	0	1	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0007	4340	1	1	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0008	4340	1	1	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0009	4340	1	1	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0010	4340	1	1	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0011	4340	1	1	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0012	4340	1	0	0	1	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0013	4340	1	0	0	1	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0014	4340	1	0	1	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0015	4340	1	1	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0016	4340	1	0	0	1	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SERTM2_chrX_111506645_111527399	0/0	t0017	4340	1	1	0	0	0	0	copy fasta	SERTM2	chrX	111506645	111527399
SESN1_chr6_108979309_109099846	1/1	t0001	4009	113	38	20	32	5	16	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0002	4005	27	2	6	8	3	8	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0003	4013	18	8	2	6	0	2	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0004	4009	5	5	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0005	4013	4	2	2	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0006	4009	3	3	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0007	4009	3	0	2	0	0	1	copy fasta	SESN1	chr6	108979309	109099846