JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SESN1_chr6_108979309_109099846	0/0	t0008	4009	3	3	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0009	4009	1	1	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0010	4009	1	1	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0011	4009	1	0	0	1	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0012	4009	1	1	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0013	4009	1	1	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0014	4009	1	0	0	0	0	1	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0015	4009	1	0	0	1	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN1_chr6_108979309_109099846	0/0	t0016	4009	1	1	0	0	0	0	copy fasta	SESN1	chr6	108979309	109099846
SESN2_chr1_28254518_28287491	0/0	t0001	2020	218	59	39	90	6	24	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0002	2021	65	5	10	38	5	7	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0003	2020	18	16	2	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0004	2020	7	5	0	0	0	2	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0005	2020	5	0	4	0	1	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0006	2020	5	0	1	0	4	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0007	2020	5	0	5	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0008	2020	3	0	3	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0009	2020	3	2	1	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0010	2020	2	1	1	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0011	2020	1	0	0	1	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0012	2020	1	1	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0013	2020	1	0	0	0	0	1	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0014	2020	1	0	0	0	0	1	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0015	2020	1	1	0	0	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0016	2020	1	0	0	1	0	0	copy fasta	SESN2	chr1	28254518	28287491
SESN2_chr1_28254518_28287491	0/0	t0017	2020	1	0	0	0	0	1	copy fasta	SESN2	chr1	28254518	28287491
SESN3_chr11_95160513_95236202	1/0	t0001	8085	47	24	7	10	1	4	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0002	8084	36	4	11	12	3	6	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0003	8085	28	5	1	20	1	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0004	8081	19	1	6	10	1	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0005	8085	19	2	2	13	0	2	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0006	8088	17	0	1	15	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0007	8081	16	0	0	15	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0008	8081	16	0	1	15	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0009	8084	12	0	1	10	1	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/1	t0010	8084	12	1	3	2	0	5	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0011	8081	11	4	5	0	0	2	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0012	8085	10	1	4	4	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0013	8081	10	0	8	1	1	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0014	8085	7	0	0	6	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0015	8088	7	0	3	3	1	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0016	8084	5	0	0	5	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0017	8084	5	0	0	5	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0018	8084	5	0	3	0	1	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0019	8081	5	0	0	5	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0020	8084	4	0	1	2	1	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0021	8085	4	4	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0022	8086	4	4	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0023	8085	4	0	0	1	0	3	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0024	8085	3	0	0	2	0	1	copy fasta	SESN3	chr11	95160513	95236202