JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SESN3_chr11_95160513_95236202	0/0	t0025	8081	3	0	0	1	2	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0026	8081	3	0	0	3	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0027	8085	3	1	2	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0028	8080	3	0	0	3	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0029	8085	3	3	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0030	8081	3	0	0	0	0	3	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0031	8085	3	3	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0032	8085	3	1	0	2	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0033	8088	3	0	0	0	2	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0034	8081	2	0	1	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0035	8085	2	1	1	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0036	8086	2	2	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0037	8085	2	0	1	0	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0038	8088	2	0	0	2	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0039	8080	2	0	1	0	1	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0040	8088	2	0	0	0	0	2	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0041	8133	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0042	8120	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0043	8081	1	0	1	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0044	8081	1	0	0	0	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0045	8134	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0046	8121	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0047	8125	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0048	8121	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0049	8123	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0050	8123	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0051	8085	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0052	8085	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0053	8085	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0054	8080	1	0	0	0	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0055	8085	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0056	8085	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0057	8103	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0058	8085	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0059	8085	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0060	8081	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0061	8085	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0062	8085	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0063	8096	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0064	8081	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0065	8081	1	0	1	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0066	8081	1	0	1	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0067	8085	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0068	8086	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0069	8085	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0070	8080	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0071	8081	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0072	8085	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0073	8085	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0074	8081	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202