JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SESN3_chr11_95160513_95236202	0/0	t0075	8084	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0076	8081	1	0	1	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0077	8080	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0078	8084	1	0	0	0	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0079	8088	1	0	0	0	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0080	8088	1	1	0	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0081	8088	1	0	1	0	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0082	8088	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0083	8087	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0084	8087	1	0	0	1	0	0	copy fasta	SESN3	chr11	95160513	95236202
SESN3_chr11_95160513_95236202	0/0	t0085	8084	1	0	0	0	0	1	copy fasta	SESN3	chr11	95160513	95236202
SESTD1_chr2_179096678_179269832	0/1	t0001	8581	59	3	12	32	2	9	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0002	8569	23	7	4	7	2	3	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0003	8584	19	0	1	14	0	4	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0004	8580	17	0	5	7	0	5	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0005	8576	12	4	0	8	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0006	8579	11	11	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0007	8569	11	0	0	11	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0008	8580	10	9	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0009	8579	8	8	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0010	8579	7	4	0	0	2	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0011	8581	7	1	1	3	0	2	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0012	8581	6	6	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0013	8579	4	4	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0014	8556	4	4	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0015	8581	4	0	2	0	2	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0016	8581	4	4	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0017	8579	3	3	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0018	8569	3	3	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0019	8585	3	0	3	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0020	8585	3	0	2	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	1/0	t0021	8581	3	0	0	0	1	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0022	8580	2	2	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0023	8580	2	1	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0024	8575	2	2	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0025	8582	2	0	1	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0026	8581	2	2	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0027	8582	2	0	0	1	1	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0028	8581	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0029	8580	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0030	8569	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0031	8579	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0032	8580	1	0	1	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0033	8580	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0034	8569	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0035	8569	1	1	0	0	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0036	8569	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0037	8569	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0038	8569	1	0	0	1	0	0	copy fasta	SESTD1	chr2	179096678	179269832
SESTD1_chr2_179096678_179269832	0/0	t0039	8580	1	0	0	0	0	1	copy fasta	SESTD1	chr2	179096678	179269832